rs11850550 chr14:32668014 G>C
- Sequence
cctattatacatctttgatgttta[G/C]tttctaccagaaagtaaataagga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue MCF-7L (invasive ductal carcinoma) BT-474 (breast invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN ESR1_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.70 | 2.32 | 1.63 | 5.31 | Concordant | |||
| GATA3_HUMAN | 0.24 | 2.29 | 1.47 | n/a | No Hit | |||
| ESR1_HUMAN | -0.14 | 1.13 | 1.68 | n/a | No Hit | |||
| GCR_HUMAN | -0.23 | 0.95 | 1.38 | n/a | No Hit |
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Motif analysis
