rs11851552 chr14:58240032 C>T
- Sequence
tttaactacatggttttatattct[C/T]cgcgtagtttcttttctaaaaaaa
- ASB in cell types
- GM12878 (female B-cells) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells) | -1.79 | 1.72 | 1.33 | |||
| HEK293 (embryonic kidney) | 0.41 | 0.52 | 1.40 | |||
| HEK293T (embryonic kidney) | 1.00 | -0.42 | 2.00 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), bipolar disorder, chronic kidney disease, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood