rs11855127 chr15:77944685 G>A
- Sequence
cggggcctgctcgagtgaggccgg[G/A]agcggaccgcagcccgctggaggt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- GABP1_HUMAN ELF1_HUMAN NR2C1_HUMAN ZBT40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | n/a | 3.43 | 2.00 | n/a | n/a | |||
| ELF1_HUMAN | -1.71 | 2.93 | 1.67 | 7.48 | Concordant | |||
| NR2C1_HUMAN | -2.09 | 2.22 | 1.78 | n/a | No Hit | |||
| ZBT40_HUMAN | -2.03 | 2.14 | 1.67 | n/a | n/a | |||
| IKZF1_HUMAN | 0.26 | 1.48 | 2.33 | n/a | No Hit |
Items per page:
1 – 5 of 8
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Transverse, Liver, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood