rs11859569 chr16:31453762 A>T
- Sequence
gggagaagaaggaaaacggcagag[A/T]agggaacaggaaggggtgaaggaa
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- PATZ1_HUMAN ZN398_HUMAN ZN121_HUMAN SP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PATZ1_HUMAN | 1.92 | -2.20 | 1.33 | -1.54 | Weak Concordant | |||
| ZN398_HUMAN | 0.81 | -0.81 | 1.00 | n/a | n/a | |||
| ZN121_HUMAN | 2.37 | n/a | 1.50 | n/a | No Hit | |||
| SP2_HUMAN | 1.94 | -1.67 | 1.33 | n/a | No Hit | |||
| PRD10_HUMAN | 1.53 | -1.79 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood