rs11866208 chr16:57300609 A>G
- Sequence
aagcctcttcacaagttctgcaat[A/G]tgcgcatgcgtagtgggcagcgaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) erythroid cells
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN NRF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.36 | 0.41 | 1.87 | n/a | n/a | |||
| SMC3_HUMAN | 1.18 | -0.03 | 1.86 | n/a | n/a | |||
| NRF1_HUMAN | -0.08 | 0.68 | 1.86 | -0.67 | Weak Discordant | |||
| MNT_HUMAN | -0.95 | 1.83 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | -0.21 | 1.72 | 1.90 | n/a | n/a |
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Motif analysis
