rs11868631 chr17:83051719 C>T
- Sequence
acccagcctgcacggcggggcacc[C/T]tccccgctggcacctaccacgtgg
- ASB in cell types
- K562 (myelogenous leukemia) Tet21N (neuroblastoma) thymus-derived CD34- cells
- ASB for transcription factors
- MYCN_HUMAN NRF1_HUMAN VEZF1_HUMAN SP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYCN_HUMAN | -0.39 | 1.95 | 2.00 | n/a | No Hit | |||
| NRF1_HUMAN | 1.01 | -1.11 | 2.00 | n/a | No Hit | |||
| VEZF1_HUMAN | 2.18 | -3.06 | 2.00 | n/a | No Hit | |||
| SP1_HUMAN | 2.10 | n/a | 2.00 | -1.12 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood