rs11869174 chr17:348907 T>C
- Sequence
tttctttgtttacgtgttaatctc[T/C]ggaaggtgcacggggagaagggtc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- SOX5_HUMAN SOX13_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX5_HUMAN | -1.82 | 1.63 | 1.33 | n/a | No Hit | |||
| SOX13_HUMAN | -1.50 | 1.84 | 1.33 | n/a | n/a | |||
| RARA_HUMAN | -1.67 | 1.83 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Hypothalamus, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid