rs11870847 chr17:38861716 T>G
- Sequence
cccggatttgaaccggggacttct[T/G]gatctgcagtcaaatgctctaccc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ZSC29_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSC29_HUMAN | -2.07 | 2.32 | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.82 | 1.73 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, cystatin c in serum, hdl cholesterol change with statins, height
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Testis