rs11878203 chr19:58408683 G>A
- Sequence
cgacccagccgcgccgcgaggaga[G/A]ccgggaatggaggtcgtggcgtga
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) CUTLL1 (T-cell lymphoblastic lymphoma 1) GM12878 (female B-cells)
- ASB for transcription factors
- ZN143_HUMAN ESR1_HUMAN CTCF_HUMAN ZN610_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 1.01 | 0.53 | 1.54 | -1.51 | Weak Concordant | |||
| ESR1_HUMAN | 1.18 | n/a | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.62 | 0.08 | 1.40 | n/a | No Hit | |||
| ZN610_HUMAN | 2.10 | -2.71 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood