rs11879347 chr19:55582190 A>T
- Sequence
gcatatatggtaagtctccaagtg[A/T]taacctgtagaagagaaaaatgga
- ASB in cell types
- embryonic kidney HEK293 (embryonic kidney)
- ASB for transcription factors
- GCR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.09 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.26 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid