rs11881344 chr19:39846440 C>T
- Sequence
accccgtagtcccgcccccgggcc[C/T]cttccccgcccggagctcggcgca
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) GM12878 (female B-cells) HEK293 (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN FOXK2_HUMAN BCL3_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.97 | -0.23 | 1.68 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.57 | 2.12 | 1.78 | n/a | n/a | |||
| BCL3_HUMAN | 0.98 | -0.01 | 1.50 | n/a | n/a | |||
| EGR1_HUMAN | 1.64 | -0.19 | 1.83 | -0.90 | Weak Concordant | |||
| CREB1_HUMAN | 0.80 | 0.84 | 1.39 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood