rs11886575 chr2:20186353 C>T
- Sequence
caggccagtccatggttcctccac[C/T]ctggctcccactccccatcccccc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.48 | -0.15 | 1.99 | |||
| GM12878 (female B-cells) | 1.51 | -1.28 | 1.50 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid