rs11889885 chr2:11688504 G>A
- Sequence
gccctgctgtatttttcaggcccc[G/A]cctgttcctcatttaccccgtaaa
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) monocyte-derived dendritic cells tibial nerve
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN EP300_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.96 | 0.23 | 1.39 | n/a | No Hit | |||
| RAD21_HUMAN | 0.96 | -0.27 | 1.17 | n/a | n/a | |||
| EP300_HUMAN | 2.63 | -0.20 | 1.42 | n/a | n/a | |||
| SPI1_HUMAN | 2.09 | -0.56 | 2.21 | -0.27 | Weak Concordant | |||
| SMC3_HUMAN | 0.84 | -0.25 | 1.07 | n/a | n/a |
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Motif analysis
