rs11893573 chr2:55779899 T>C
- Sequence
tccagcggatctacgctgtctgca[T/C]tcctcatctgttagtcacttagta
- ASB in cell types
- HEK293 (embryonic kidney) LHSAR (prostate epithelial cells) SK-N-SH (neuroblastoma) foreskin keratinocyte
- ASB for transcription factors
- ANDR_HUMAN GATA3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.31 | -1.60 | 1.50 | n/a | No Hit | |||
| GATA3_HUMAN | 1.29 | -0.38 | 1.80 | n/a | No Hit | |||
| CTCF_HUMAN | 1.72 | -1.40 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Thyroid