rs1190045 chr6:105268447 T>C
- Sequence
ttacgtccacacaaaacttgtgcg[T/C]gggtgtttatagcagtttattcat
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.07 | 0.91 | 1.52 | -1.64 | Weak Discordant | |||
| FOXA1_HUMAN | 0.69 | 0.69 | 1.45 | n/a | No Hit |
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Motif analysis
