rs1193726 chr11:63277520 A>C
- Sequence
cagtaggtttcgtattggtctttg[A/C]agtttgacccacaggccagtagat
- ASB in cell types
- 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) foreskin keratinocyte liver
- ASB for transcription factors
- CTCF_HUMAN HNF4A_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.72 | 2.47 | 1.58 | n/a | No Hit | |||
| HNF4A_HUMAN | 1.78 | -2.03 | 1.33 | -1.46 | Weak Concordant | |||
| RAD21_HUMAN | -0.68 | 1.24 | 1.33 | n/a | n/a |
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Motif analysis
