rs119418 chr20:49418309 G>T
- Sequence
ttgaccttatctctaaatgggtta[G/T]gtacacaaacagggacagaatgat
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.28 | 1.16 | 1.43 | 0.80 | Weak Concordant | |||
| FOXA2_HUMAN | -1.45 | 1.69 | 1.33 | 1.15 | Weak Concordant |
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Motif analysis
