rs11943099 chr4:6688214 G>A
- Sequence
ggagcgaggaaggagggagcagca[G/A]gtgcttcgagcgccactgggtggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) keratinocytes LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN GRHL2_HUMAN RAD21_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.84 | 0.65 | 1.60 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.64 | 0.05 | 1.93 | n/a | No Hit | |||
| RAD21_HUMAN | 1.80 | -1.41 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.46 | 0.61 | 2.04 | n/a | No Hit | |||
| CREB1_HUMAN | 1.77 | -0.88 | 2.00 | n/a | No Hit |
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Motif analysis
