rs11982496 chr7:131786201 G>A
- Sequence
gcagagctatctcataggcagaca[G/A]cccctaggaggaagagcagcagca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- GABP1_HUMAN RFX1_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | -2.64 | 2.32 | 1.50 | n/a | n/a | |||
| RFX1_HUMAN | -0.69 | 1.60 | 1.44 | n/a | No Hit | |||
| NR2C1_HUMAN | 0.04 | 2.36 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, birth weight, hdl cholesterol