rs12029562 chr1:67700742 G>A
- Sequence
ggagtgctggctctcagaagcagg[G/A]gccatctctgcagcgtgtccggtt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF2_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -1.07 | 1.68 | 1.67 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.90 | 1.73 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, homa-b