rs1203104 chr4:3461725 G>A
- Sequence
ccctgcctctccctgtagggataa[G/A]caagtgccaggcgcccagggcagc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) G523NS (glioblastoma)
- ASB for transcription factors
- ESR1_HUMAN ASCL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.26 | 0.18 | 2.08 | n/a | No Hit | |||
| ASCL1_HUMAN | -2.24 | 2.03 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP diabetic retinopathy in type 2 diabetes mellitus, ldl cholesterol, rheumatoid arthritis, total cholesterol
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Lung, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid