rs12045375 chr1:16624394 G>A
- Sequence
ttctcccgggccacttgccccagc[G/A]tctccacctgtcactgggcctccc
- ASB in cell types
- Ishikawa (endometrial adenocarcinoma) MCF7 (Invasive ductal breast carcinoma) keratinocytes NCI-H2171 (small cell lung carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN MAX_HUMAN ASCL1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.05 | n/a | 3.00 | n/a | No Hit | |||
| MAX_HUMAN | 2.26 | -1.28 | 1.56 | n/a | No Hit | |||
| ASCL1_HUMAN | 2.68 | n/a | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 1.37 | -0.70 | 2.48 | n/a | No Hit | |||
| NFIC_HUMAN | 2.69 | -3.41 | 2.00 | n/a | No Hit |
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