rs12061116 chr1:32893000 G>C
- Sequence
gcatactgttccccgcccctctgg[G/C]cccagctgcctctggccctccagc
- ASB in cell types
- VCaP (prostate carcinoma) K562 (myelogenous leukemia) OCI-LY7 (diffuse large B-cell lymphoma)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| VCaP (prostate carcinoma) | 2.36 | -0.72 | 2.00 | |||
| K562 (myelogenous leukemia) | 0.59 | 0.41 | 1.34 | |||
| OCI-LY7 (diffuse large B-cell lymphoma) | 1.72 | -1.58 | 1.33 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood