rs12062131 chr1:212255993 C>T
- Sequence
ctgtcccaagtacacaggatataa[C/T]gtgccctccctggagatgtccaca
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZBT26_HUMAN ELF3_HUMAN ETV5_HUMAN TEAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 2.05 | -1.85 | 1.00 | n/a | n/a | |||
| ELF3_HUMAN | 2.03 | -2.06 | 1.33 | n/a | No Hit | |||
| ETV5_HUMAN | 1.86 | -2.11 | 1.33 | n/a | No Hit | |||
| TEAD3_HUMAN | 1.81 | -1.46 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood