rs12065911 chr1:11908323 C>T
- Sequence
gattccgttaaatcgcgtgtggag[C/T]tatgtaaagtgtattatagaacaa
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) SK-N-SH (neuroblastoma) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN ILF3_HUMAN COE3_HUMAN KMT2A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.46 | 0.83 | 1.25 | n/a | No Hit | |||
| ILF3_HUMAN | 0.84 | n/a | 1.33 | n/a | n/a | |||
| COE3_HUMAN | 1.82 | -1.61 | 1.33 | n/a | n/a | |||
| KMT2A_HUMAN | -2.67 | 2.08 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood