ADASTRA v1.6.10
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adastra.autosome.org
rs12068175
chr1:153783715
G
>
C
Sequence
gcggaaaggcgtcaggcgcatgga[G/C]ccaacatactccctggcagcctcc
ASB in cell types
A549 (lung carcinoma)
cranial neural crest cells
ASB for transcription factors
JUN_HUMAN
BCL3_HUMAN
AP2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN
1.42
-0.12
7.5·10
-7
1.00
2.00
n/a
No Hit
BCL3_HUMAN
1.91
-0.52
1.7·10
-3
1.00
2.00
n/a
n/a
AP2A_HUMAN
2.06
-3.98
0.01
1.00
2.50
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
cystatin c in serum
,
diastolic blood pressure (dbp)
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Aorta
,
Artery_Tibial
,
Heart_Left_Ventricle
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)