rs12083193 chr1:151990213 G>C
- Sequence
ccccaaaagtgttcaactatgaac[G/C]gaacagtagatagagtacacagga
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma)
- ASB for transcription factors
- ESR1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.97 | n/a | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | 0.86 | -0.55 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, hdl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Kidney_Cortex, Liver, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid