rs12083727 chr1:20362015 G>T
- Sequence
ctgtgggcgtgcactgccttccag[G/T]cccggaccagctcctgccaaaggc
- ASB in cell types
- neural cell K562 (myelogenous leukemia) H1 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN HINFP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.67 | 0.31 | 1.42 | n/a | No Hit | |||
| RAD21_HUMAN | 0.87 | 0.35 | 1.42 | n/a | n/a | |||
| HINFP_HUMAN | -1.80 | 1.60 | 1.33 | n/a | No Hit |
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