ADASTRA v1.6.10
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adastra.autosome.org
rs12087955
chr1:210374145
A
>
C
Sequence
ttcctctttaagtctttttttata[A/C]aacatgatctgcctccccagggca
ASB in cell types
HEK293 (embryonic kidney)
MDA231-LM2-4175 (breast adenocarcinoma)
MDA-MB-231 (breast adenocarcinoma)
ASB for transcription factors
E2F1_HUMAN
TEAD4_HUMAN
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
E2F1_HUMAN
2.24
-2.49
2.0·10
-5
1.00
1.33
n/a
No Hit
TEAD4_HUMAN
2.00
n/a
0.03
1.00
2.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
diabetic retinopathy in type 2 diabetes mellitus
,
height
,
suicide attempts in bipolar disorder (males)
GTEx eQTL
Brain_Spinal_cord_cervical_c-1
,
Colon_Sigmoid
,
Colon_Transverse
,
Lung
,
Nerve_Tibial
,
Pituitary
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2(Alt/Ref motif p-value)