rs12092731 chr1:11908338 T>C
- Sequence
cgtgtggagctatgtaaagtgtat[T/C]atagaacaaatgcgagttacggtt
- ASB in cell types
- K562 (myelogenous leukemia) D341 Med (medulloblastoma) BEAS-2B (bronchial epithelium) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- GCR_HUMAN SMAD5_HUMAN NDF1_HUMAN ZBED1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.98 | -0.33 | 1.27 | n/a | No Hit | |||
| SMAD5_HUMAN | 2.68 | n/a | 1.50 | n/a | n/a | |||
| NDF1_HUMAN | 2.18 | -2.28 | 1.50 | n/a | No Hit | |||
| ZBED1_HUMAN | 2.58 | -3.11 | 1.50 | n/a | n/a | |||
| SPI1_HUMAN | 2.40 | -0.50 | 1.92 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood