rs12102548 chr16:71895860 C>G
- Sequence
ctctggtcctggatcctcgaagcc[C/G]cttaactttcccctagtcttcctg
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- CLOCK_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | -2.90 | 2.28 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.73 | 1.73 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, hdl cholesterol, height, homa-b, ldl cholesterol, total cholesterol, total cholesterol change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood