rs12104935 chr2:110106331 G>A
- Sequence
ctcgtatcatacaggtaatggcat[G/A]gtcagcccccagcacccgcagaca
- ASB in cell types
- A549 (lung carcinoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- JUNB_HUMAN EP300_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUNB_HUMAN | 1.16 | -0.12 | 1.68 | n/a | No Hit | |||
| EP300_HUMAN | 1.21 | 0.05 | 1.87 | n/a | n/a | |||
| BCL3_HUMAN | 0.76 | -0.41 | 1.69 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid