rs12113294 chr7:98281325 C>G
- Sequence
ggccccgccctccccctcctccac[C/G]ggtagggggacctcggccggcctg
- ASB in cell types
- breast tumor tissue A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN NR2F6_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.04 | -0.08 | 1.75 | -4.61 | Concordant | |||
| NR2F6_HUMAN | 1.48 | -0.76 | 1.42 | n/a | n/a | |||
| ESR1_HUMAN | -2.21 | 2.04 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid