rs12118279 chr1:211258687 G>A
- Sequence
aaacagttgcatcgctcagccccg[G/A]aaactcatcccgtcatccccagac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells) thymus-derived CD34- cells
- ASB for transcription factors
- FOXK2_HUMAN TAF9B_HUMAN HDAC1_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.68 | 2.12 | 1.92 | n/a | n/a | |||
| TAF9B_HUMAN | n/a | 2.92 | 2.50 | n/a | n/a | |||
| HDAC1_HUMAN | -0.64 | 1.87 | 2.67 | n/a | n/a | |||
| NCOR1_HUMAN | -3.47 | 2.08 | 2.50 | n/a | n/a | |||
| PATZ1_HUMAN | 2.24 | -3.29 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid