rs12125591 chr1:235630873 T>A
- Sequence
aaaatgaaacgtgagcctaaccaa[T/A]caccagctaatttctaatgagaga
- ASB in cell types
- VCaP (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA1_HUMAN TBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -3.49 | 2.80 | 2.17 | 4.18 | Concordant | |||
| TBX3_HUMAN | -2.38 | 2.44 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Breast_Mammary_Tissue, Colon_Transverse, Nerve_Tibial, Small_Intestine_Terminal_Ileum