rs12125964 chr1:3806266 T>C
- Sequence
ggggagagagagagagagacagct[T/C]acgccattatttctgcttatcata
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN ATF3_HUMAN NFIC_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 1.99 | -1.89 | 1.33 | n/a | No Hit | |||
| ATF3_HUMAN | 1.95 | -2.19 | 1.33 | 4.67 | Discordant | |||
| NFIC_HUMAN | 1.98 | -2.01 | 1.33 | n/a | No Hit | |||
| MTG16_HUMAN | 1.88 | -1.45 | 1.50 | n/a | n/a | |||
| ARI1B_HUMAN | 1.57 | -1.82 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood