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rs12131796 chr1:200909599 G>A

Sequence
ccaaaggccatccatgaagcaagt[G/A]gttttcttccaaagactctagttt
ASB in cell types
GM12878 (female B-cells)
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View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12878 (female B-cells) 0.28 0.49 0.538.7·10-3 1.30
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Motif analysis

No data available

Genetic associations

EMBL-EBI chronic inflammatory diseases (ankylosing spondylitis, crohns disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)
GRASP infant head circumference,  ldl cholesterol,  rheumatoid arthritis,  triglycerides
Finemapping ankylosing spondylitis,  celiac disease,  multiple sclerosis,  ulcerative colitis
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Minor_Salivary_Gland,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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