rs12132219 chr1:16905254 G>A
- Sequence
aagtggtttactgtaaggctgagg[G/A]ctatgcattctatggctatgttgt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- T2AG_HUMAN ERR1_HUMAN ELF1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| T2AG_HUMAN | 2.36 | n/a | 1.33 | n/a | n/a | |||
| ERR1_HUMAN | 2.86 | n/a | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | 3.23 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.10 | -0.32 | 1.32 | n/a | No Hit | |||
| ENL_HUMAN | 2.20 | n/a | 3.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood