rs12137162 chr1:19436902 C>A
- Sequence
caacctccagaaaacagtgctgga[C/A]tctgtgtacccgcagtgtggctgg
- ASB in cell types
- liver VCaP (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- HNF4A_HUMAN SP1_HUMAN ANDR_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 2.97 | -3.49 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 2.17 | -2.07 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | 1.79 | n/a | 2.00 | -2.07 | Concordant | |||
| STAT1_HUMAN | 1.02 | -3.66 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP abnormal involuntary movement scale, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, irritible bowel syndrome, mitral annular calcium, tardive dyskinesia, type 1 diabetes
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Testis, Thyroid, Whole_Blood