rs12140021 chr1:151837054 C>G
- Sequence
gagggagagagaagaaggtcactg[C/G]tgacgtcagggacattcaggtaga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN COT2_HUMAN CLOCK_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.67 | 0.68 | 2.22 | n/a | No Hit | |||
| COT2_HUMAN | 2.43 | n/a | 3.00 | 1.21 | Weak Discordant | |||
| CLOCK_HUMAN | 2.09 | -0.48 | 2.50 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.30 | -0.05 | 2.07 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.73 | 0.56 | 1.97 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen