rs12140351 chr1:16905240 C>T
- Sequence
tgttatggttatcaaagtggttta[C/T]tgtaaggctgagggctatgcattc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) D341 Med (medulloblastoma)
- ASB for transcription factors
- CTCF_HUMAN NDF1_HUMAN ZN687_HUMAN ERR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.58 | 0.02 | 1.45 | n/a | No Hit | |||
| NDF1_HUMAN | 2.17 | -1.46 | 1.50 | n/a | No Hit | |||
| ZN687_HUMAN | 2.22 | 0.05 | 2.25 | n/a | n/a | |||
| ERR1_HUMAN | 2.70 | -3.05 | 1.33 | n/a | No Hit | |||
| MNT_HUMAN | 2.66 | -2.28 | 3.08 | n/a | n/a |
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