rs12141347 chr1:163315799 C>T
- Sequence
agcagatagctattttgaattcaa[C/T]gctatttttcttcttaaccctggg
- ASB in cell types
- foreskin keratinocyte A549 (lung carcinoma) K562 (myelogenous leukemia) HEK293 (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | -2.19 | 2.01 | 2.00 | |||
| A549 (lung carcinoma) | 0.71 | -0.35 | 2.02 | |||
| K562 (myelogenous leukemia) | -0.55 | 0.52 | 2.80 | |||
| HEK293 (embryonic kidney) | 0.62 | -0.24 | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid