ADASTRA v1.6.10
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rs1217397
chr1:113904943
G
>
A
Sequence
accctaggctcttcaggccctacc[G/A]tcggccggcaggccgttcgccccg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
E2F1_HUMAN
ZBT40_HUMAN
CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
E2F1_HUMAN
1.78
n/a
6.5·10
-3
1.00
2.00
n/a
No Hit
ZBT40_HUMAN
4.22
n/a
0.01
1.00
6.00
n/a
n/a
CREB1_HUMAN
3.21
n/a
0.04
1.00
6.00
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
2 hour glucose
,
acute lung injury following major trauma
,
advanced age-related macular degeneration
,
chronic kidney disease
,
prop taste detection threshold
,
rheumatoid arthritis
,
serum creatinine
,
total cholesterol change with statins
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)