rs12196247 chr6:139029045 G>A
- Sequence
gctgggccgagacctcgcgggttg[G/A]ggtcccgtggggcgcgcgccgccc
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- MGAP_HUMAN EGR1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | -2.50 | 2.32 | 1.33 | n/a | n/a | |||
| EGR1_HUMAN | 0.04 | 1.43 | 1.37 | n/a | No Hit | |||
| STAT1_HUMAN | 1.83 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Whole_Blood