rs1220411 chr1:9864619 T>C
- Sequence
tgagattacaggtgtgagccaccg[T/C]gcctggccggacaagggcctattc
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- MEF2B_HUMAN IKZF1_HUMAN REQU_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | -2.60 | 2.51 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | -1.72 | 1.93 | 1.33 | n/a | No Hit | |||
| REQU_HUMAN | -2.19 | 2.10 | 1.33 | n/a | n/a | |||
| IKZF2_HUMAN | -1.72 | 1.65 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg