rs12212281 chr6:53956278 C>G
- Sequence
atccacaggggctgcagctccccc[C/G]agtggctacagaagagcagctctg
- ASB in cell types
- HepG2 (hepatoblastoma) foreskin keratinocyte 22RV1 (prostate carcinoma) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TEAD3_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.65 | 0.20 | 1.37 | -1.25 | Weak Concordant | |||
| RAD21_HUMAN | 1.61 | -1.42 | 1.73 | n/a | n/a | |||
| TEAD3_HUMAN | 2.45 | -3.72 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.70 | n/a | 1.33 | n/a | n/a | |||
| SRF_HUMAN | 0.96 | -0.60 | 1.37 | n/a | No Hit |
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Motif analysis
