rs12217742 chr10:13372068 G>A
- Sequence
tgcagatccccactatggccggta[G/A]gaggcagcataacctaatgctctg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN NCOR1_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.30 | 0.65 | 1.61 | -6.23 | Concordant | |||
| RAD21_HUMAN | 1.15 | 0.05 | 1.77 | n/a | n/a | |||
| NCOR1_HUMAN | 1.80 | -1.93 | 2.00 | n/a | n/a | |||
| REST_HUMAN | 0.71 | n/a | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.78 | -0.81 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
