rs12243911 chr10:133144089 A>G
- Sequence
ccttggtctagcggtgatgccagc[A/G]tctgggaagacacccgtcgccgag
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) liver
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN205_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | 0.39 | 1.56 | n/a | No Hit | |||
| RAD21_HUMAN | 1.99 | -0.20 | 1.74 | n/a | n/a | |||
| ZN205_HUMAN | 1.73 | -2.00 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 1.44 | -1.30 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellum, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid