rs12245661 chr10:32446089 A>T
- Sequence
cagctcacgctcgcagcgtcagcg[A/T]cgccggcggcgccaaggcgtcgtg
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes foreskin keratinocyte
- ASB for transcription factors
- STAT1_HUMAN JUN_HUMAN BCL3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.79 | -0.25 | 2.11 | n/a | No Hit | |||
| JUN_HUMAN | -0.31 | 0.99 | 2.00 | n/a | No Hit | |||
| BCL3_HUMAN | -0.63 | 1.12 | 1.90 | n/a | n/a | |||
| RAD21_HUMAN | -0.27 | 0.81 | 1.88 | n/a | n/a | |||
| TRI22_HUMAN | -1.63 | 1.84 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic