rs12264350 chr10:46032122 T>C
- Sequence
gcccacatagcatgtttaaacaga[T/C]aggggacaggggaaaataaagctc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- ARI1B_HUMAN HTF4_HUMAN NCOR1_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 1.45 | n/a | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | 3.12 | -2.77 | 1.42 | n/a | No Hit | |||
| NCOR1_HUMAN | 2.36 | -0.36 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | 1.65 | 0.36 | 1.33 | n/a | n/a | |||
| SOX6_HUMAN | 1.60 | -1.88 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood